STRINGSTRING
Psed_1491 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1491" - benzoate-CoA ligase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1491benzoate-CoA ligase (532 aa)    
Predicted Functional Partners:
Psed_6051
Amidase (472 aa)
 
 
  0.917
Psed_1490
benzoyl-CoA-dihydrodiol lyase (585 aa)
 
     
  0.912
Psed_1489
benzoyl-CoA oxygenase subunit B (470 aa)
 
     
  0.912
Psed_5991
Amidase (477 aa)
   
 
  0.905
Psed_3554
Amidase (480 aa)
   
 
  0.905
Psed_3248
Amidase (489 aa)
   
 
  0.905
Psed_3241
Amidase (509 aa)
   
 
  0.905
Psed_2964
Amidase (490 aa)
   
 
  0.905
Psed_1537
Amidase (444 aa)
   
 
  0.905
Psed_1453
Amidase (515 aa)
   
 
  0.905
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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