STRINGSTRING
Psed_1516 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1516" - Integral membrane protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1516Integral membrane protein (119 aa)    
Predicted Functional Partners:
Psed_1517
Beta-lactamase domain-containing protein (262 aa)
              0.775
Psed_1935
Hypothetical protein (118 aa)
   
          0.704
Psed_1515
Integral membrane protein (122 aa)
              0.594
Psed_3562
Peptidase S1 and S6 chymotrypsin/Hap (300 aa)
   
          0.584
Psed_1960
CsbD family protein (57 aa)
   
          0.542
Psed_0315
Hypothetical protein (262 aa)
   
          0.533
Psed_3343
DNA-directed DNA polymerase (502 aa)
   
          0.520
Psed_5709
Hypothetical protein (101 aa)
   
          0.506
Psed_4009
UspA domain-containing protein (175 aa)
   
          0.506
Psed_5822
G-D-S-L family lipolytic protein (266 aa)
   
          0.475
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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