STRINGSTRING
Psed_1522 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1522" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1522Hypothetical protein (237 aa)    
Predicted Functional Partners:
Psed_4031
Iron-sulfur cluster binding protein (488 aa)
       
      0.674
Psed_1521
Carboxymuconolactone decarboxylase (134 aa)
              0.642
Psed_1294
mercury(II) reductase (481 aa)
 
        0.621
Psed_4322
Dihydrolipoyl dehydrogenase (460 aa)
 
        0.551
Psed_5273
Dihydrolipoyl dehydrogenase (467 aa)
 
        0.537
Psed_1277
Dihydrolipoyl dehydrogenase (451 aa)
 
        0.518
Psed_5942
Hypothetical protein (223 aa)
 
          0.517
Psed_2506
Dihydrolipoyl dehydrogenase (451 aa)
 
        0.508
Psed_4694
Mycothione reductase (466 aa)
 
        0.501
Psed_1269
Type 11 methyltransferase (270 aa)
 
          0.485
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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