STRINGSTRING
Psed_1530 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1530" - Transcription factor WhiB in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1530Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (97 aa)    
Predicted Functional Partners:
Psed_4736
Hypothetical protein (107 aa)
   
          0.766
Psed_3321
RecB family exonuclease (371 aa)
   
          0.760
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (92 aa)
   
     
  0.757
Psed_6493
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (118 aa)
   
     
  0.745
Psed_3055
Hypothetical protein (100 aa)
   
          0.715
Psed_3610
Lipid A biosynthesis acyltransferase (306 aa)
   
          0.664
Psed_2813
Hypothetical protein (95 aa)
   
          0.663
Psed_0159
FAD-binding 9 siderophore-interacting domain-containing protein (315 aa)
   
          0.659
Psed_5611
Phosphoglycerate mutase (210 aa)
   
          0.649
Psed_1531
Anti-anti-sigma factor (150 aa)
 
          0.640
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (9%) [HD]