STRINGSTRING
Psed_1538 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1538" - Anti-sigma-factor antagonist in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1538Anti-sigma-factor antagonist (130 aa)    
Predicted Functional Partners:
Psed_1537
Amidase (444 aa)
              0.548
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction- proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as ’pretransfer’ editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated ’posttransfer’ editing and involves dea [...] (577 aa)
   
          0.540
Psed_2308
Response regulator receiver modulated serine phosphatase (562 aa)
   
          0.476
Psed_1528
Anti-sigma factor (150 aa)
   
          0.453
Psed_2505
SigB/F/G subfamily RNA polymerase sigma-28 subunit (283 aa)
 
          0.442
Psed_0273
Hypothetical protein (204 aa)
   
          0.442
Psed_2350
FliA/WhiG subfamily RNA polymerase sigma-28 subunit (270 aa)
 
          0.438
Psed_4233
Ser/Thr phosphatase (415 aa)
   
          0.435
Psed_3152
ATP-binding protein (179 aa)
   
          0.428
Psed_3147
SigB/F/G subfamily RNA polymerase sigma-28 subunit (288 aa)
 
          0.416
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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