STRINGSTRING
Psed_1539 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1539" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1539Hypothetical protein (291 aa)    
Predicted Functional Partners:
Psed_3512
Hypothetical protein (248 aa)
   
          0.679
Psed_0457
Thioredoxin (144 aa)
   
          0.661
Psed_4480
Hypothetical protein (254 aa)
   
          0.655
Psed_6238
HAD-superfamily hydrolase (260 aa)
   
          0.643
Psed_0452
Hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands (214 aa)
   
          0.618
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (140 aa)
   
          0.551
frr
Ribosome-recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another (185 aa)
   
          0.537
Psed_1542
Hypothetical protein (786 aa)
              0.532
Psed_1541
Histidine kinase (573 aa)
              0.532
Psed_1540
Phosphonate-transporting ATPase (258 aa)
              0.532
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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