STRINGSTRING
Psed_1542 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1542" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1542Hypothetical protein (786 aa)    
Predicted Functional Partners:
Psed_1541
Histidine kinase (573 aa)
 
          0.905
Psed_1540
Phosphonate-transporting ATPase (258 aa)
              0.859
Psed_0719
TetR family transcriptional regulator (197 aa)
   
          0.772
Psed_4297
Hypothetical protein (1703 aa)
   
          0.732
Psed_0856
DNA translocase FtsK (678 aa)
   
          0.732
Psed_5778
DNA translocase FtsK (672 aa)
   
          0.708
Psed_1127
DNA translocase FtsK (749 aa)
   
          0.698
Psed_4215
Pyridoxamine 5’-phosphate oxidase-related FMN-binding protein (185 aa)
   
          0.639
Psed_1593
F420-dependent protein (146 aa)
   
          0.621
sbcC
Exonuclease SbcC; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3’->5’ double strand exonuclease that can open hairpins. It also has a 5’ single-strand endonuclease activity (1107 aa)
   
          0.603
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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