STRINGSTRING
Psed_1563 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1563" - IclR family transcriptional regulator in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1563IclR family transcriptional regulator (250 aa)    
Predicted Functional Partners:
Psed_0263
IclR family transcriptional regulator (247 aa)
   
          0.778
Psed_3758
IclR family transcriptional regulator (256 aa)
   
          0.772
Psed_1564
4-hydroxybenzoate 3-monooxygenase (393 aa)
   
   
  0.769
Psed_3209
IclR family transcriptional regulator (258 aa)
   
          0.765
Psed_1566
Protocatechuate 3,4-dioxygenase subunit alpha (197 aa)
         
  0.720
Psed_1565
Protocatechuate 3,4-dioxygenase subunit beta (240 aa)
         
  0.720
Psed_3035
3-oxoacid CoA-transferase subunit A (482 aa)
         
  0.526
Psed_1562
Hypothetical protein (297 aa)
              0.461
Psed_2323
IclR family transcriptional regulator (213 aa)
   
          0.451
Psed_1567
GtrA family protein (165 aa)
              0.448
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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