STRINGSTRING
Psed_1572 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1572" - Glycoside hydrolase protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1572Glycoside hydrolase protein (409 aa)    
Predicted Functional Partners:
Psed_0573
Hydrolase transmembrane protein (333 aa)
         
    0.900
Psed_5929
Beta-lactamase (367 aa)
     
  0.698
Psed_1571
Glutathione transferase (332 aa)
   
        0.674
Psed_5334
Peptidase M23 (250 aa)
 
   
  0.635
Psed_5479
Beta-lactamase (409 aa)
       
  0.607
Psed_3986
Peptidase M23 (297 aa)
 
   
  0.601
Psed_6182
Kynurenine--oxoglutarate transaminase (387 aa)
   
 
  0.580
Psed_6012
Aspartate transaminase (391 aa)
   
 
  0.580
Psed_5465
Aspartate transaminase (407 aa)
   
 
  0.580
Psed_3566
Aspartate transaminase (384 aa)
   
 
  0.580
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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