STRINGSTRING
Psed_1574 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1574" - Carboxymuconolactone decarboxylase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1574Carboxymuconolactone decarboxylase (184 aa)    
Predicted Functional Partners:
Psed_6649
3-oxoadipate enol-lactonase (260 aa)
       
    0.901
Psed_6052
3-oxoadipate enol-lactonase (284 aa)
       
    0.901
Psed_2746
3-carboxy-cis,cis-muconate cycloisomerase (380 aa)
         
    0.900
Psed_0261
Carboxymuconolactone decarboxylase (190 aa)
   
          0.778
Psed_1805
Phenylacetone monooxygenase (366 aa)
 
          0.584
rplQ
50S ribosomal protein L17 (245 aa)
     
        0.558
Psed_6268
acyl-CoA dehydrogenase (346 aa)
 
        0.541
Psed_1573
Biotin carboxylase (1873 aa)
              0.535
Psed_1806
Hypothetical protein (154 aa)
   
          0.516
Psed_2329
Peroxidase (212 aa)
   
   
  0.502
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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