STRINGSTRING
Psed_1583 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1583" - F420-dependent protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1583F420-dependent protein (130 aa)    
Predicted Functional Partners:
Psed_4583
Hypothetical protein (142 aa)
   
          0.679
Psed_4743
Hypothetical protein (71 aa)
   
          0.669
Psed_2984
HhH-GPD family protein (210 aa)
   
          0.630
Psed_5701
Hypothetical protein (144 aa)
   
          0.617
Psed_2467
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (272 aa)
 
            0.606
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis (457 aa)
              0.573
Psed_3017
Precorrin-6y C5,15-methyltransferase subunit CbiE (405 aa)
              0.571
Psed_1582
Excalibur domain-containing protein (316 aa)
              0.568
Psed_1116
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (125 aa)
   
          0.568
Psed_4064
Hypothetical protein (139 aa)
   
          0.565
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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