STRINGSTRING
Psed_1604 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1604" - methylcrotonoyl-CoA carboxylase in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1604methylcrotonoyl-CoA carboxylase (664 aa)    
Predicted Functional Partners:
Psed_1603
methylcrotonoyl-CoA carboxylase (532 aa)
  0.998
Psed_4005
Carbamoyl-phosphate synthase L chain ATP-binding protein (1086 aa)
 
0.989
Psed_5261
propionyl-CoA carboxylase (553 aa)
 
  0.989
Psed_6157
methylcrotonoyl-CoA carboxylase (530 aa)
  0.988
Psed_5277
propionyl-CoA carboxylase (508 aa)
 
  0.986
Psed_0517
propionyl-CoA carboxylase (465 aa)
 
  0.983
Psed_4409
methylmalonyl-CoA mutase large subunit (1081 aa)
   
   
  0.982
Psed_4796
isovaleryl-CoA dehydrogenase (379 aa)
   
 
  0.967
Psed_3139
isovaleryl-CoA dehydrogenase (413 aa)
   
 
  0.956
Psed_5260
biotin-(acetyl-CoA carboxylase) ligase (279 aa)
 
  0.951
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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