STRINGSTRING
Psed_1610 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1610" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1610Hypothetical protein (581 aa)    
Predicted Functional Partners:
Psed_1609
Hypothetical protein (261 aa)
 
          0.965
Psed_1608
enoyl-CoA hydratase (254 aa)
   
        0.914
Psed_1606
enoyl-CoA hydratase (263 aa)
              0.866
Psed_1605
o-succinylbenzoate--CoA ligase (523 aa)
              0.860
Psed_1607
o-succinylbenzoate--CoA ligase (506 aa)
              0.860
Psed_1603
methylcrotonoyl-CoA carboxylase (532 aa)
 
   
  0.850
Psed_1604
methylcrotonoyl-CoA carboxylase (664 aa)
   
   
  0.812
Psed_1702
butyryl-CoA dehydrogenase (385 aa)
 
   
  0.756
Psed_1598
butyryl-CoA dehydrogenase (383 aa)
 
   
  0.681
Psed_4005
Carbamoyl-phosphate synthase L chain ATP-binding protein (1086 aa)
   
   
  0.627
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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