STRINGSTRING
Psed_1613 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1613" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1613Hypothetical protein (103 aa)    
Predicted Functional Partners:
Psed_1923
tryptophanyl-tRNA synthetase (346 aa)
   
          0.686
Psed_3143
DEAD/DEAH box helicase domain-containing protein (840 aa)
 
          0.681
Psed_3872
RNA binding S1 domain-containing protein (487 aa)
   
          0.678
Psed_3160
FHA domain-containing protein (148 aa)
   
          0.653
Psed_6552
MerR family transcriptional regulator (155 aa)
   
          0.633
Psed_1612
Alpha/beta hydrolase (283 aa)
              0.586
Psed_1611
Adenylate kinase (190 aa)
              0.565
Psed_0120
FHA domain-containing protein (412 aa)
   
          0.560
Psed_0117
Cell cycle protein (487 aa)
   
          0.554
Psed_0041
Natural resistance-associated macrophage protein (434 aa)
   
          0.514
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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