STRINGSTRING
Psed_1614 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1614" - Cell envelope-related transcriptional attenuator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1614Cell envelope-related transcriptional attenuator (756 aa)    
Predicted Functional Partners:
whiA
Sporulation transcriptional regulator whiA; May be required for sporulation (327 aa)
   
          0.658
Psed_3408
Glucose-6-phosphate isomerase (503 aa)
 
          0.610
Psed_6200
PspA/IM30 family protein (212 aa)
 
          0.587
Psed_1647
Hypothetical protein (291 aa)
   
          0.565
Psed_0615
Hypothetical protein (457 aa)
   
          0.562
Psed_5215
Cell envelope-related transcriptional attenuator (541 aa)
   
          0.547
rsfS
Iojap family protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation (140 aa)
 
          0.540
Psed_1648
Hypothetical protein (437 aa)
   
          0.524
Psed_5031
Cell envelope-related transcriptional attenuator (495 aa)
   
          0.522
Psed_1613
Hypothetical protein (103 aa)
              0.498
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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