STRINGSTRING
Psed_1615 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1615" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1615Hypothetical protein (282 aa)    
Predicted Functional Partners:
Psed_1616
Hypothetical protein (422 aa)
 
     
  0.987
Psed_1167
Hypothetical protein (426 aa)
 
     
  0.881
Psed_0535
Hypothetical protein (226 aa)
 
          0.864
Psed_2327
Cobalamin (vitamin B12) biosynthesis protein CbiM (369 aa)
 
          0.734
Psed_3351
Cobalamin (vitamin B12) biosynthesis protein CbiM (239 aa)
 
          0.575
Psed_2326
Cobalt ABC transporter inner membrane subunit CbiQ (316 aa)
 
          0.562
Psed_1775
Cysteine desulfurase (477 aa)
 
          0.424
Psed_1986
Hypothetical protein (256 aa)
   
          0.418
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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