STRINGSTRING
Psed_1646 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1646" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1646Hypothetical protein (142 aa)    
Predicted Functional Partners:
Psed_3750
Hypothetical protein (169 aa)
 
          0.644
Psed_3342
Amine oxidase (509 aa)
 
          0.608
Psed_1645
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (236 aa)
              0.601
Psed_4506
Hypothetical protein (58 aa)
   
          0.590
Psed_4564
Hypothetical protein (122 aa)
   
          0.573
Psed_2791
Hypothetical protein (232 aa)
   
          0.476
Psed_0668
Hypothetical protein (94 aa)
   
          0.467
Psed_1934
Hypothetical protein (375 aa)
   
          0.441
Psed_3424
Hypothetical protein (235 aa)
   
          0.436
Psed_3561
Aromatic-ring-hydroxylating dioxygenase subunit beta (189 aa)
   
          0.430
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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