STRINGSTRING
Psed_1649 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1649" - Pentapeptide repeat-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1649Pentapeptide repeat-containing protein (292 aa)    
Predicted Functional Partners:
Psed_6089
ABC transporter (261 aa)
 
     
  0.544
Psed_2609
Transcriptional regulator TrmB (301 aa)
   
          0.532
Psed_1906
Beta-lactamase domain-containing protein (257 aa)
 
      0.525
Psed_6505
Beta-lactamase domain-containing protein (265 aa)
   
      0.465
Psed_6463
Beta-lactamase domain-containing protein (248 aa)
   
      0.465
Psed_6220
Beta-lactamase (264 aa)
   
      0.465
Psed_5982
Beta-lactamase domain-containing protein (269 aa)
   
      0.465
Psed_4904
Beta-lactamase domain-containing protein (276 aa)
   
      0.465
Psed_4353
Beta-lactamase domain-containing protein (465 aa)
   
      0.465
Psed_4070
Beta-lactamase domain-containing protein (282 aa)
   
      0.465
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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