STRINGSTRING
Psed_1653 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1653" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1653Hypothetical protein (434 aa)    
Predicted Functional Partners:
Psed_1654
Hypothetical protein (164 aa)
              0.881
Psed_1655
Hypothetical protein (317 aa)
              0.863
Psed_0841
Hypothetical protein (121 aa)
   
          0.631
Psed_1657
Cobalt transporter subunit CbtB (69 aa)
 
          0.591
Psed_1652
Hypothetical protein (659 aa)
              0.582
Psed_1656
Hypothetical protein (246 aa)
              0.546
Psed_1792
LysR family transcriptional regulator (386 aa)
   
          0.545
Psed_4495
Hypothetical protein (141 aa)
   
          0.541
Psed_4362
Vitamin K epoxide reductase (207 aa)
 
          0.538
Psed_3437
Hypothetical protein (65 aa)
   
          0.532
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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