STRINGSTRING
Psed_1661 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1661" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1661Hypothetical protein (344 aa)    
Predicted Functional Partners:
Psed_1660
Hypothetical protein (267 aa)
 
          0.971
Psed_1712
DivIVA domain-containing protein (304 aa)
   
          0.739
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (499 aa)
              0.700
argS
arginyl-tRNA synthetase (547 aa)
              0.698
Psed_0142
RecB family nuclease (585 aa)
   
          0.668
Psed_5241
Histidine kinase (423 aa)
   
          0.637
Psed_0964
Hypothetical protein (216 aa)
   
          0.632
Psed_0111
Hypothetical protein (164 aa)
   
          0.623
Psed_6657
Integral membrane protein (473 aa)
   
          0.615
Psed_5646
Heat shock protein 90 (997 aa)
   
          0.595
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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