STRINGSTRING
Psed_1724 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1724" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1724Hypothetical protein (439 aa)    
Predicted Functional Partners:
Psed_2611
ATPase AAA (743 aa)
   
          0.673
Psed_0341
Type 12 methyltransferase (361 aa)
   
          0.591
Psed_1444
Antibiotic biosynthesis monooxygenase (98 aa)
   
          0.586
Psed_1723
Metalloprotease-like protein (452 aa)
              0.561
Psed_0808
Antibiotic biosynthesis monooxygenase (96 aa)
   
          0.552
Psed_5914
Hydantoinase B/oxoprolinase (684 aa)
   
          0.535
Psed_5912
Acetone carboxylase subunit gamma (125 aa)
   
          0.418
Psed_4157
Major facilitator superfamily protein (395 aa)
   
          0.406
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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