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Psed_1727 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1727" - ECF subfamily RNA polymerase sigma-24 subunit in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1727ECF subfamily RNA polymerase sigma-24 subunit (226 aa)    
Predicted Functional Partners:
Psed_2039
ECF subfamily RNA polymerase sigma-24 subunit (218 aa)
   
          0.632
Psed_1726
Hypothetical protein (317 aa)
              0.604
Psed_1028
ECF subfamily RNA polymerase sigma-24 subunit (221 aa)
   
          0.586
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1300 aa)
     
 
  0.582
Psed_6676
ECF subfamily RNA polymerase sigma-24 subunit (182 aa)
   
          0.568
Psed_1729
Trehalose synthase (587 aa)
         
  0.550
Psed_0659
ECF subfamily RNA polymerase sigma-24 subunit (190 aa)
   
          0.543
Psed_1728
Aminoglycoside phosphotransferase (467 aa)
              0.538
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (238 aa)
 
     
  0.529
Psed_6512
Colicin V production protein (400 aa)
   
   
  0.493
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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