STRINGSTRING
alc protein (Pseudonocardia dioxanivorans) - STRING interaction network
"alc" - Allantoicase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alcAllantoicase (309 aa)    
Predicted Functional Partners:
Psed_1758
Allantoinase (441 aa)
   
 
  0.991
Psed_1768
OHCU decarboxylase (158 aa)
        0.971
Psed_4201
Allantoinase (488 aa)
   
 
  0.944
Psed_3030
Allantoinase (478 aa)
   
 
  0.944
ureA
Urease subunit gamma (100 aa)
   
 
  0.912
ureC
Urease subunit alpha (570 aa)
   
 
    0.909
ureB
Urease subunit beta (125 aa)
   
 
    0.907
Psed_6134
Ureidoglycolate lyase (280 aa)
     
 
    0.905
Psed_5067
Ureidoglycolate lyase (270 aa)
     
 
    0.905
Psed_4250
Ureidoglycolate lyase (278 aa)
     
 
    0.905
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (9%) [HD]