STRINGSTRING
Psed_1787 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1787" - Luciferase-like protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1787Luciferase-like protein (285 aa)    
Predicted Functional Partners:
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (812 aa)
 
          0.875
Psed_1379
F420-dependent oxidoreductase (304 aa)
   
          0.658
Psed_6203
Luciferase-like protein (349 aa)
   
          0.539
Psed_6332
F420-dependent oxidoreductase (289 aa)
   
          0.532
Psed_4041
F420-dependent oxidoreductase (290 aa)
   
          0.517
Psed_1789
Hypothetical protein (239 aa)
 
          0.509
Psed_6189
Hypothetical protein (222 aa)
   
          0.480
Psed_4570
F420-dependent oxidoreductase (311 aa)
   
          0.475
Psed_5898
Luciferase-like protein (297 aa)
   
          0.446
Psed_4225
Luciferase-like protein (347 aa)
   
          0.442
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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