STRINGSTRING
Psed_1811 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1811" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1811Hypothetical protein (107 aa)    
Predicted Functional Partners:
Psed_1809
formyl-CoA transferase (397 aa)
              0.664
Psed_1810
3-oxoacyl-ACP reductase (252 aa)
              0.662
Psed_1808
Alpha/beta hydrolase (328 aa)
              0.662
Psed_1806
Hypothetical protein (154 aa)
              0.611
Psed_1807
Hypothetical protein (373 aa)
              0.610
Psed_1805
Phenylacetone monooxygenase (366 aa)
              0.561
Psed_1812
Hypothetical protein (138 aa)
              0.540
Psed_1804
Transposase IS116/IS110/IS902 family protein (347 aa)
              0.527
Psed_1803
Major facilitator superfamily protein (502 aa)
              0.404
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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