STRINGSTRING
Psed_1819 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1819" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1819Hypothetical protein (139 aa)    
Predicted Functional Partners:
Psed_1818
Dihydroxy-acid dehydratase (613 aa)
              0.864
Psed_5576
Hypothetical protein (170 aa)
   
          0.771
Psed_0430
Hypothetical protein (247 aa)
   
          0.765
Psed_3867
Hypothetical protein (166 aa)
   
          0.760
Psed_0164
Hypothetical protein (275 aa)
   
          0.753
Psed_6643
Hypothetical protein (207 aa)
   
          0.732
Psed_6514
Hypothetical protein (225 aa)
   
          0.725
Psed_0206
Family 2 glycosyl transferase (304 aa)
   
          0.717
Psed_0142
RecB family nuclease (585 aa)
   
          0.716
Psed_1525
Hypothetical protein (73 aa)
   
          0.689
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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