STRINGSTRING
Psed_1883 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1883" - Polysaccharide deacetylase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1883Polysaccharide deacetylase (270 aa)    
Predicted Functional Partners:
Psed_1884
Family 2 glycosyl transferase (366 aa)
   
   
  0.876
Psed_5694
Family 2 glycosyl transferase (511 aa)
 
   
  0.862
Psed_5325
Family 2 glycosyl transferase (387 aa)
   
   
  0.840
Psed_0574
Polysaccharide deacetylase (735 aa)
   
   
  0.840
Psed_0571
Polysaccharide deacetylase (899 aa)
   
   
  0.840
Psed_1885
N-acetylglucosamine-1-phosphate uridyltransferase (189 aa)
              0.773
Psed_1769
Xanthine permease (619 aa)
   
   
  0.680
Psed_1887
DegT/DnrJ/EryC1/StrS aminotransferase (386 aa)
   
   
  0.664
Psed_1886
DegT/DnrJ/EryC1/StrS aminotransferase (369 aa)
   
   
  0.664
Psed_3588
DNA polymerase I (939 aa)
         
  0.607
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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