STRINGSTRING
Psed_1903 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1903" - Carboxylate-amine ligase ybdK in Pseudonocardia dioxanivorans
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1903Carboxylate-amine ligase ybdK (853 aa)    
Predicted Functional Partners:
Psed_1901
Acylaminoacyl-peptidase (643 aa)
 
          0.852
Psed_1902
Asparagine synthase (593 aa)
 
          0.790
Psed_6538
ATPase AAA (804 aa)
   
          0.606
Psed_1904
Haloacid dehalogenase (196 aa)
              0.545
Psed_5285
Amidohydrolase (415 aa)
            0.491
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle (928 aa)
 
          0.488
Psed_0333
Amidohydrolase (406 aa)
            0.473
Psed_1341
Gamma-glutamyltransferase (598 aa)
         
  0.462
Psed_2795
Transglutaminase domain-containing protein (832 aa)
   
        0.430
Psed_2130
Transglutaminase domain-containing protein (230 aa)
   
        0.430
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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