STRINGSTRING
Psed_1917 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1917" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1917Hypothetical protein (294 aa)    
Predicted Functional Partners:
Psed_1916
Carnitine O-acetyltransferase (588 aa)
          0.990
Psed_1915
Hypothetical protein (287 aa)
 
          0.970
Psed_3768
Hypothetical protein (770 aa)
   
          0.663
Psed_5223
Sporulation-associated protein (385 aa)
   
          0.593
Psed_3245
ATPase-like protein (1005 aa)
   
          0.556
Psed_3660
Helix-turn-helix domain-containing protein (296 aa)
   
          0.535
Psed_3903
Hypothetical protein (131 aa)
   
          0.514
Psed_1332
Branched-chain amino acid binding protein (338 aa)
   
          0.509
Psed_1914
Hypothetical protein (61 aa)
              0.498
Psed_0196
Hypothetical protein (586 aa)
   
          0.465
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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