STRINGSTRING
Psed_1922 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1922" - Major facilitator superfamily protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1922Major facilitator superfamily protein (389 aa)    
Predicted Functional Partners:
Psed_1921
AraC family transcriptional regulator (256 aa)
 
          0.923
Psed_3263
AraC family transcriptional regulator (247 aa)
 
          0.553
Psed_3344
G-D-S-L family lipolytic protein (305 aa)
   
          0.513
Psed_1925
LysR family transcriptional regulator (311 aa)
   
          0.486
Psed_3438
Cupin (154 aa)
   
          0.476
Psed_5032
Cytochrome c oxidase caa3-type, assembly factor CtaG-like protein (319 aa)
   
          0.454
Psed_0884
ABC transporter membrane protein (250 aa)
   
          0.424
Psed_3250
Integrase catalytic subunit (553 aa)
   
          0.415
Psed_5897
Hypothetical protein (494 aa)
   
          0.404
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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