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Psed_1959 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1959" - ECF subfamily RNA polymerase sigma-24 subunit in Pseudonocardia dioxanivorans
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1959ECF subfamily RNA polymerase sigma-24 subunit (258 aa)    
Predicted Functional Partners:
Psed_1958
Hypothetical protein (218 aa)
              0.890
Psed_1957
Hypothetical protein (135 aa)
              0.859
Psed_0291
ECF subfamily RNA polymerase sigma-24 subunit (203 aa)
   
          0.778
Psed_5845
ECF subfamily RNA polymerase sigma-24 subunit (184 aa)
   
          0.777
Psed_0659
ECF subfamily RNA polymerase sigma-24 subunit (190 aa)
   
          0.737
Psed_1960
CsbD family protein (57 aa)
              0.625
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1300 aa)
     
 
  0.582
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (238 aa)
 
     
  0.509
Psed_6512
Colicin V production protein (400 aa)
   
   
  0.493
Psed_5707
Peptidase S1 and S6 chymotrypsin/Hap (299 aa)
   
   
  0.493
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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