STRINGSTRING
Psed_1960 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1960" - CsbD family protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1960CsbD family protein (57 aa)    
Predicted Functional Partners:
Psed_3928
Major facilitator superfamily protein (434 aa)
   
          0.670
Psed_0086
ANTAR domain-containing protein (251 aa)
   
          0.652
Psed_1959
ECF subfamily RNA polymerase sigma-24 subunit (258 aa)
              0.625
Psed_1958
Hypothetical protein (218 aa)
              0.624
Psed_1957
Hypothetical protein (135 aa)
              0.624
Psed_2376
ANTAR domain-containing protein (190 aa)
   
          0.610
Psed_0651
ANTAR domain-containing protein (257 aa)
   
          0.602
Psed_2338
ANTAR domain-containing protein (247 aa)
   
          0.600
Psed_5938
Glycoside hydrolase protein (95 aa)
   
          0.547
Psed_1516
Integral membrane protein (119 aa)
   
          0.542
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]