STRINGSTRING
Psed_1976 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1976" - Lysyl oxidase-like protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1976Lysyl oxidase-like protein (317 aa)    
Predicted Functional Partners:
Psed_3140
ArsR family transcriptional regulator (201 aa)
   
          0.706
Psed_6636
Nitric-oxide synthase; Catalyzes the production of nitric oxide (417 aa)
   
          0.647
Psed_4496
Hypothetical protein (375 aa)
   
          0.625
Psed_4444
Alpha/beta hydrolase (263 aa)
   
          0.622
Psed_5626
Hypothetical protein (526 aa)
   
          0.621
Psed_2736
Hypothetical protein (226 aa)
   
          0.597
Psed_0976
TetR family transcriptional regulator (209 aa)
   
          0.576
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate (136 aa)
              0.569
Psed_1858
Polysaccharide biosynthesis protein (528 aa)
   
          0.568
Psed_4499
Lipase class 2 (265 aa)
   
          0.563
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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