STRINGSTRING
Psed_1994 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1994" - ATPase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1994ATPase (294 aa)    
Predicted Functional Partners:
Psed_1995
Von Willebrand factor A (472 aa)
 
        0.980
Psed_6136
Von Willebrand factor A (405 aa)
 
          0.863
Psed_2642
Von Willebrand factor A (374 aa)
 
          0.853
Psed_5738
Von Willebrand factor A (382 aa)
 
          0.819
Psed_1993
ATP-dependent DNA helicase RecQ (701 aa)
              0.627
Psed_5675
Carbon-monoxide dehydrogenase (825 aa)
 
     
  0.591
Psed_3483
Molecular chaperone DnaJ (331 aa)
         
  0.590
Psed_2658
Carbon-monoxide dehydrogenase large subunit (802 aa)
 
     
  0.589
Psed_1461
Carbon-monoxide dehydrogenase (774 aa)
 
     
  0.558
Psed_6473
Carbon-monoxide dehydrogenase (806 aa)
 
     
  0.541
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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