STRINGSTRING
Psed_2039 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2039" - ECF subfamily RNA polymerase sigma-24 subunit in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2039ECF subfamily RNA polymerase sigma-24 subunit (218 aa)    
Predicted Functional Partners:
Psed_2040
Transmembrane anti-sigma factor (323 aa)
              0.872
Psed_0291
ECF subfamily RNA polymerase sigma-24 subunit (203 aa)
   
          0.775
Psed_1918
ECF subfamily RNA polymerase sigma-24 subunit (311 aa)
   
          0.690
Psed_1727
ECF subfamily RNA polymerase sigma-24 subunit (226 aa)
   
          0.632
Psed_3658
ECF subfamily RNA polymerase sigma-24 subunit (348 aa)
   
          0.599
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1300 aa)
     
 
  0.582
Psed_6512
Colicin V production protein (400 aa)
   
   
  0.493
Psed_5707
Peptidase S1 and S6 chymotrypsin/Hap (299 aa)
   
   
  0.493
Psed_2444
PDZ/DHR/GLGF domain-containing protein (433 aa)
   
   
  0.493
Psed_1591
Peptidase S1 and S6 chymotrypsin/Hap (567 aa)
   
   
  0.493
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]