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Psed_2052 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2052" - Hydrolase CocE/NonD family protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2052Hydrolase CocE/NonD family protein (556 aa)    
Predicted Functional Partners:
sigA
RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (461 aa)
     
      0.662
Psed_2978
RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (348 aa)
     
      0.662
Psed_2051
Major facilitator superfamily protein (469 aa)
 
          0.619
Psed_2611
ATPase AAA (743 aa)
   
          0.500
Psed_2610
FAD dependent oxidoreductase (465 aa)
   
          0.489
Psed_4346
Activator of Hsp90 ATPase 1 family protein (160 aa)
   
          0.480
Psed_5843
Hypothetical protein (245 aa)
   
          0.460
Psed_4075
Activator of Hsp90 ATPase 1 family protein (153 aa)
   
          0.434
Psed_0080
ABC transporter permease (313 aa)
              0.412
Psed_0079
ABC transporter substrate-binding protein (507 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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