STRINGSTRING
Psed_2067 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2067" - ABC transporter in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2067ABC transporter (235 aa)    
Predicted Functional Partners:
Psed_2065
ABC transporter permease (351 aa)
 
  0.997
Psed_2068
ABC transporter permease (288 aa)
 
 
  0.996
Psed_2066
Monosaccharide-transporting ATPase (256 aa)
 
0.993
Psed_3877
ABC transporter permease (389 aa)
 
  0.986
Psed_2601
ABC transporter permease (373 aa)
 
  0.985
Psed_6261
ABC transporter permease (329 aa)
 
  0.985
Psed_2064
ABC transporter substrate-binding protein (386 aa)
 
 
  0.982
Psed_2570
Phosphonate-transporting ATPase (626 aa)
 
0.981
Psed_3876
ABC transporter permease (335 aa)
 
  0.978
Psed_3734
ABC transporter permease (296 aa)
 
  0.978
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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