STRINGSTRING
Psed_2089 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2089" - Microcompartments protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2089Microcompartments protein (109 aa)    
Predicted Functional Partners:
Psed_2087
Ethanolamine utilization protein EutJ family protein (288 aa)
 
   
  0.954
Psed_2090
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml (97 aa)
 
          0.937
Psed_2088
Acetaldehyde dehydrogenase (462 aa)
 
   
  0.910
Psed_2086
Microcompartments protein (213 aa)
 
          0.879
Psed_6480
Hypothetical protein (145 aa)
 
   
  0.751
Psed_4242
Hypothetical protein (143 aa)
 
   
  0.684
Psed_2085
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate (430 aa)
              0.627
Psed_2084
Molecular chaperone GroES (344 aa)
              0.621
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor (368 aa)
       
      0.613
Psed_2083
PucR family transcriptional regulator (722 aa)
              0.582
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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