STRINGSTRING
Psed_2112 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2112" - Cupin in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2112Cupin (131 aa)    
Predicted Functional Partners:
Psed_2114
Hypothetical protein (61 aa)
              0.582
Psed_2113
Short-chain dehydrogenase/reductase SDR (235 aa)
              0.582
Psed_2923
Amidohydrolase (292 aa)
   
          0.516
Psed_4073
Cupin (143 aa)
   
          0.510
Psed_0937
Hypothetical protein (1307 aa)
   
          0.510
Psed_0107
Dipeptidylaminopeptidase/acylaminoacyl- peptidase-like protein (366 aa)
   
          0.458
Psed_0926
Cupin (151 aa)
   
          0.431
Psed_0211
GCN5-like N-acetyltransferase (215 aa)
   
          0.418
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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