STRINGSTRING
Psed_2130 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2130" - Transglutaminase domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2130Transglutaminase domain-containing protein (230 aa)    
Predicted Functional Partners:
Psed_2131
Beta-lactamase domain-containing protein (359 aa)
              0.843
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP (526 aa)
              0.560
Psed_2129
Excisionase (70 aa)
              0.540
Psed_2579
Hypothetical protein (137 aa)
 
          0.516
Psed_2460
Hypothetical protein (215 aa)
   
          0.512
Psed_2132
Hypothetical protein (162 aa)
              0.499
Psed_1903
Carboxylate-amine ligase ybdK (853 aa)
   
        0.430
cysS
cysteinyl-tRNA synthetase (482 aa)
              0.412
Psed_6064
Muconate and chloromuconate cycloisomerase (373 aa)
              0.412
Psed_6026
Mandelate racemase (372 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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