STRINGSTRING
Psed_2143 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2143" - Alkyl hydroperoxide reductase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2143Alkyl hydroperoxide reductase (152 aa)    
Predicted Functional Partners:
Psed_2329
Peroxidase (212 aa)
 
 
  0.912
rpmI
50S ribosomal protein L35 (64 aa)
   
        0.742
Psed_2142
Hypothetical protein (144 aa)
              0.723
Psed_4567
Hypothetical protein (294 aa)
   
        0.691
Psed_2141
2-oxo-acid dehydrogenase E1; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) (922 aa)
   
        0.621
Psed_4920
Sarcosine oxidase (956 aa)
   
   
  0.617
Psed_1955
Glutamate synthase (1522 aa)
   
   
  0.614
rpmE2
50S ribosomal protein L31 (83 aa)
   
        0.598
rpmE
50S ribosomal protein L31; Binds the 23S rRNA (73 aa)
   
        0.598
Psed_2723
Magnesium chelatase (755 aa)
     
   
  0.595
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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