STRINGSTRING
Psed_2150 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2150" - NIPSNAP family containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2150NIPSNAP family containing protein (112 aa)    
Predicted Functional Partners:
Psed_2151
YhdH/YhfP family quinone oxidoreductase (333 aa)
              0.859
Psed_2152
Hypothetical protein (48 aa)
              0.834
Psed_2438
FAD dependent oxidoreductase (614 aa)
   
          0.693
Psed_3158
OsmC family protein (172 aa)
   
          0.677
Psed_1487
Hypothetical protein (233 aa)
   
          0.555
Psed_0881
Hypothetical protein (89 aa)
   
          0.450
Psed_6441
Beta-lactamase (400 aa)
   
          0.441
Psed_5929
Beta-lactamase (367 aa)
   
          0.434
Psed_2686
SMP-30/Gluconolaconase/LRE-like region-containing protein (306 aa)
   
          0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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