STRINGSTRING
Psed_2189 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2189" - ABC transporter in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2189ABC transporter (564 aa)    
Predicted Functional Partners:
Psed_2187
ABC transporter permease (316 aa)
   
  0.979
Psed_2188
ABC transporter permease (306 aa)
   
  0.972
Psed_2190
ABC transporter substrate-binding protein (543 aa)
 
   
  0.957
Psed_1002
ABC transporter permease (310 aa)
   
  0.873
Psed_1003
ABC transporter permease (323 aa)
   
  0.858
Psed_3695
ABC transporter permease (347 aa)
   
  0.857
Psed_6014
ABC transporter permease (310 aa)
   
  0.848
Psed_4090
ABC transporter permease (337 aa)
   
  0.847
Psed_3694
ABC transporter permease (321 aa)
   
  0.847
Psed_0080
ABC transporter permease (313 aa)
   
  0.845
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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