STRINGSTRING
Psed_2244 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2244" - Peptidase M24 in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2244Peptidase M24 (395 aa)    
Predicted Functional Partners:
Psed_4920
Sarcosine oxidase (956 aa)
   
 
  0.739
Psed_3588
DNA polymerase I (939 aa)
   
   
  0.709
Psed_3001
Non-ribosomal peptide synthetase domain-containing protein (2056 aa)
 
   
  0.672
Psed_5545
Hypothetical protein (117 aa)
   
          0.658
Psed_2761
DNA polymerase III subunit epsilon (586 aa)
   
   
  0.599
Psed_4248
NADPH dehydrogenase (748 aa)
 
   
  0.592
Psed_5407
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed (274 aa)
 
   
  0.570
Psed_3533
Elongation factor P (187 aa)
   
 
  0.548
Psed_6244
Transketolase (677 aa)
   
   
  0.526
Psed_3462
1-deoxy-D-xylulose-5-phosphate synthase (629 aa)
   
   
  0.526
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (20%) [HD]