STRINGSTRING
Psed_2299 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2299" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2299Hypothetical protein (133 aa)    
Predicted Functional Partners:
Psed_2298
UspA domain-containing protein (297 aa)
 
          0.654
Psed_2433
DoxX family protein (202 aa)
 
          0.653
Psed_1981
Cupin (116 aa)
   
          0.623
Psed_0705
UspA domain-containing protein (294 aa)
   
          0.599
Psed_4633
Cupin (132 aa)
   
          0.591
Psed_5166
Hypothetical protein (125 aa)
   
          0.550
Psed_1150
Hypothetical protein (315 aa)
   
          0.527
Psed_1577
Glyoxalase/bleomycin resistance protein/dioxygenase (133 aa)
   
          0.487
Psed_1647
Hypothetical protein (291 aa)
   
          0.482
Psed_5578
LuxR family transcriptional regulator (932 aa)
   
          0.473
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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