STRINGSTRING
Psed_2300 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2300" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2300Hypothetical protein (252 aa)    
Predicted Functional Partners:
Psed_3297
Respiratory-chain NADH dehydrogenase domain 51 kDa subunit (626 aa)
   
    0.940
Psed_5565
NADH dehydrogenase (quinone) (273 aa)
   
    0.702
Psed_3041
NADH dehydrogenase (ubiquinone) 24 kDa subunit (158 aa)
   
    0.702
Psed_0681
Carbonic anhydrase; Reversible hydration of carbon dioxide (181 aa)
     
 
  0.699
Psed_0365
Carbonic anhydrase; Reversible hydration of carbon dioxide (168 aa)
     
 
  0.699
Psed_6249
Ribulose bisphosphate carboxylase large chain (476 aa)
     
 
  0.694
Psed_6250
Ribulose-bisphosphate carboxylase (141 aa)
       
 
  0.642
Psed_5563
NADH-quinone oxidoreductase subunit G (820 aa)
   
  0.611
Psed_5564
NADH-quinone oxidoreductase subunit F (450 aa)
   
    0.606
Psed_3042
NADH dehydrogenase (quinone) (499 aa)
   
    0.606
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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