STRINGSTRING
Psed_2318 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2318" - Regulatory protein MerR in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2318Regulatory protein MerR (178 aa)    
Predicted Functional Partners:
Psed_2317
Hypothetical protein (32 aa)
              0.642
Psed_0121
Hypothetical protein (207 aa)
   
          0.631
Psed_4863
Hypothetical protein (284 aa)
   
          0.574
Psed_6570
ABC transporter (255 aa)
   
          0.571
Psed_3811
Hypothetical protein (255 aa)
   
          0.562
Psed_2316
Hypothetical protein (170 aa)
              0.524
Psed_0165
Hypothetical protein (294 aa)
   
          0.503
egtA
Glutamate/cysteine ligase protein; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). This compound is used as substrate for the biosynthesis of the low-molecular thiol compound ergothioneine (455 aa)
   
          0.499
Psed_3168
Hypothetical protein (375 aa)
   
          0.470
Psed_0086
ANTAR domain-containing protein (251 aa)
 
          0.448
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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