STRINGSTRING
Psed_2330 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2330" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2330Hypothetical protein (295 aa)    
Predicted Functional Partners:
Psed_5958
Agarase (371 aa)
   
          0.648
Psed_0732
LytTr DNA-binding protein (463 aa)
   
          0.640
Psed_2393
Gas vesicle protein GvpA (66 aa)
   
          0.567
Psed_2329
Peroxidase (212 aa)
              0.524
Psed_0735
PQQ-dependent dehydrogenase (562 aa)
   
          0.489
Psed_2392
Gas vesicle synthesis GvpLGvpF (249 aa)
   
          0.463
Psed_2338
ANTAR domain-containing protein (247 aa)
   
          0.444
Psed_0739
Coenzyme PQQ biosynthesis protein PqqD (92 aa)
   
          0.424
Psed_5251
Hypothetical protein (217 aa)
   
          0.422
Psed_3048
AmiS/UreI transporter (212 aa)
   
          0.400
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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