STRINGSTRING
Psed_2349 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2349" - ATP-binding protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2349ATP-binding protein (137 aa)    
Predicted Functional Partners:
Psed_2348
Hypothetical protein (385 aa)
 
          0.875
Psed_3152
ATP-binding protein (179 aa)
   
          0.778
Psed_2423
Polyketide cyclase/dehydrase (149 aa)
   
          0.736
Psed_4476
Hypothetical protein (131 aa)
   
          0.722
Psed_2350
FliA/WhiG subfamily RNA polymerase sigma-28 subunit (270 aa)
              0.564
Psed_0668
Hypothetical protein (94 aa)
   
          0.560
Psed_0434
Response regulator receiver modulated serine phosphatase (397 aa)
   
          0.557
Psed_0966
Hypothetical protein (217 aa)
   
          0.538
Psed_2314
ATP-binding protein (241 aa)
   
          0.526
Psed_5529
Transcription factor WhiB (94 aa)
   
          0.522
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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