STRINGSTRING
Psed_2419 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2419" - Flavodoxin-like protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2419Flavodoxin-like protein (192 aa)    
Predicted Functional Partners:
Psed_2418
Formate dehydrogenase subunit alpha (1078 aa)
         
  0.730
Psed_2417
4Fe-4S ferredoxin (286 aa)
              0.715
Psed_2421
Type 11 methyltransferase (258 aa)
              0.645
Psed_2420
Methylenetetrahydrofolate reductase (334 aa)
              0.645
Psed_2416
Polysulfide reductase NrfD (331 aa)
              0.569
Psed_2631
DNA topoisomerase IB (359 aa)
 
          0.545
Psed_5943
Type 12 methyltransferase (203 aa)
   
          0.508
Psed_5940
UDP-glucose 4-epimerase (351 aa)
 
        0.502
Psed_2400
Ferritin (181 aa)
   
   
  0.490
Psed_5004
Ferritin (197 aa)
   
   
  0.483
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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